Robin Kobus, M.Sc.

Kobus, Robin

High Performance Computing
Academic Staff Member

Visitor Address:

PhysMat (2413)
Staudingerweg 9
55128 Mainz, DE
PhysMat - 03-130

Phone: +49 6131 39 29551

Email: kobus@uni-mainz.de

Website: https://www.hpc.informatik.uni-mainz.de/robin-kobus/

Portrait Kobus, Robin

Research Interests

  • High Performance Computing
  • Optimization of parallel algorithms for CPU & GPU
  • Parallel Architectures
  • Metagenomic Classification & Abundance Estimation

Links

GitHub

Teaching

  • WT 2017/18: Exercises for "Technische Informatik" lecture
  • ST 2017: Exercises for "Formale Sprachen und Berechenbarkeit" lecture
  • WT 2020/21: Exercises and tutorial for "Accelerated Computing with GPU" lecture
  • WT 2020/21: CUDA Parallel Programming practical
  • ST 2021: Exercises and tutorial for "High Performance Computing" lecture

Publications

2021

Kobus, R., Müller, A., Jünger, D., et al. (2021). MetaCache-GPU: Ultra-Fast Metagenomic Classification. Author/Publisher URL

2020

Jünger, D., Kobus, R., Müller, A., et al. (2020). WarpCore: A Library for fast Hash Tables on GPUs. CoRR, abs/2009.07914.
Jünger, D., Kobus, R., Müller, A., et al. (2020). WarpCore: A Library for fast Hash Tables on GPUs. HiPC, 11-20. Author/Publisher URL
Kobus, R., Abuín, J. M., Müller, A., et al. (2020). A big data approach to metagenomics for all-food-sequencing. BMC Bioinform., 21, 102-102.

2019

Kobus, R., Jünger, D., Hundt, C., and Schmidt, B. (2019, August 5). Gossip: Efficient Communication Primitives for Multi-GPU Systems. Proceedings of the 48th International Conference on Parallel Processing. Published. ICPP 2019: 48th International Conference on Parallel Processing. DOI
Büren, F., Jünger, D., Kobus, R., et al. (2019, June 17). Suffix Array Construction on Multi-GPU Systems. Proceedings of the 28th International Symposium on High-Performance Parallel and Distributed Computing. HPDC ’19: The 28th International Symposium on High-Performance Parallel and Distributed Computing. DOI

2018

Kobus, R., Lamoth, A., Müller, A., et al. (2018). cuBool: bit-parallel Boolean Matrix Factorization on CUDA-enabled accelerators. Seiten: 465-472. Author/Publisher URL
Xu, K., Kobus, R., Chan, Y., et al. (2018). SPECTR: Scalable Parallel Short Read Error Correction on Multi-core and Many-core Architectures. ICPP, 39:1-39:1. Author/Publisher URL

2017

Kobus, R., Hundt, C., Müller, A., and Schmidt, B. (2017). Accelerating metagenomic read classification on CUDA-enabled GPUs. BMC Bioinformatics, 18(11), 10 S. Author/Publisher URL