Postdoctoral Researcher
Research Interests
- Parallelization of bioinformatic algorithms and applications with GPUs
- Short read alignment algorithms
- Genome-wide association studies
- Numerical computation using the PGAS programming model
- Autotuning on multicore clusters
- Optimization of parallel algorithms using communication avoidance and overlapping
Short Scientific CV (until 2015)
- 16/02/2013 - 30/08/2013 Postdoctoral researcher at the Computer Architecture Group (University of A Coruña, Spain)
- 01/08/2009 - 15/02/2013 Predoctoral research fellow at the Computer Architecture Group (University of A Coruña, Spain)
- 16/04/2012 - 16/06/2012 Academic visitor at the Edinburgh Parallel Computing Centre (United Kingdom)
- 05/10/2011 -05/12/2011 Academic visitor at the Lawrence Berkeley National Laboratory (USA)
- 23/03/2009 - 31/07/2009 Teaching assistant at the Department of Electronics and Systems (University of A Coruña, Spain)
- 16/07/2008 - 22/03/2009 Research assistant at the Computer Architecture Group (University of A Coruña, Spain)
Publications (only 2015, complete and updated list at http://gac.udc.es/~jgonzalezd/)
González-Domínguez, J, Ramos, S, Touriño, J, and Schmidt, B (2015).
Parallel Pairwise Epistasis Detection on Heterogeneous Computing Architectures
IEEE Transactions on Parallel and Distributed Systems, Accepted.
González-Domínguez, J, Kässens, JC, Wienbrandt, L, and Schmidt, B (2015).
Large-Scale Genome-Wide Association Studies on a GPU Cluster Using a CUDA-Accelerated PGAS Programming Model
International journal of High Performance Computing Applications, Accepted.
Kässens, JC, Wienbrandt, L, González-Domínguez, J, Schmidt, B, and Schimmler, M (2015).
High-Speed Exhaustive 3-locus Interaction Epistasis Analysis on FPGAs
The Journal of Computational Science, 9:131-136.
González-Domínguez, J and Schmidt, B (2015).
GPU-Accelerated Exhaustive Search for Third-Order Epistatic Interactions in Case-Control Studies
The Journal of Computational Science, 8:93-100.
González-Domínguez, J and Schmidt, B (2015).
Using a CUDA-Accelerated PGAS Model on a GPU Cluster for Bioinformatics
In: GPU Technology Conference (GTC 2015).
Liu, Y, González-Domínguez, J, and Schmidt, B (2015).
Faster Compressed Sparse Row (CSR)-based Sparse Matrix-Vector Multiplication using CUDA
In: GPU Technology Conference (GTC 2015).
González-Domínguez, J, Wienbrandt, L, Kässens, JC, Ellinghaus, D, Schimmler, M, and Schmidt, B (2015).
Parallelizing Epistasis Detection in GWAS on FPGA and GPU-accelerated Computing Systems
IEEE/ACM Transactions on Computational Biology and Bioinformatics, Accepted.
Teaching
- "Parallel Algorithms and Architectures (PAA)" course, Tutorials (Summer Semester 2014) Johannes Gutenberg Universität, Germany
- "Computer Architecture" course, 120 hours of lab lessons (12/01/2012 – 31/07/2013) B.S. in Computer Science, Faculty of Informatics, University of A Coruña, Spain
- "Computer Technology" course, 90 hours of lab lessons (23/03/2009 – 31/07/2009) B.S. in Computer Science, Faculty of Informatics, University of A Coruña, Spain