Jorge Gonzalez-Dominguez, Dr.

Portraitfoto Gonzalez

Postdoctoral Researcher

Johannes Gutenberg University Mainz
Institute of Computer Science
Staudingerweg 9
55128 Mainz
Room: 03-126

E-Mail:
Phone number: +49-6131-39-23615

Research Interests

  • Parallelization of bioinformatic algorithms and applications with GPUs
  • Short read alignment algorithms
  • Genome-wide association studies
  • Numerical computation using the PGAS programming model
  • Autotuning on multicore clusters
  • Optimization of parallel algorithms using communication avoidance and overlapping

Short Scientific CV (until 2015)

  • 16/02/2013 - 30/08/2013 Postdoctoral researcher at the Computer Architecture Group (University of A Coruña, Spain)
  • 01/08/2009 - 15/02/2013 Predoctoral research fellow at the Computer Architecture Group (University of A Coruña, Spain)
  • 16/04/2012 - 16/06/2012 Academic visitor at the Edinburgh Parallel Computing Centre (United Kingdom)
  • 05/10/2011 -05/12/2011 Academic visitor at the Lawrence Berkeley National Laboratory (USA)
  • 23/03/2009 - 31/07/2009 Teaching assistant at the Department of Electronics and Systems (University of A Coruña, Spain)
  • 16/07/2008 - 22/03/2009 Research assistant at the Computer Architecture Group (University of A Coruña, Spain)

Publications (only 2015, complete and updated list at http://gac.udc.es/~jgonzalezd/)

González-Domínguez, J, Ramos, S, Touriño, J, and Schmidt, B (2015).

Parallel Pairwise Epistasis Detection on Heterogeneous Computing Architectures
IEEE Transactions on Parallel and Distributed Systems, Accepted.

González-Domínguez, J, Kässens, JC, Wienbrandt, L, and Schmidt, B (2015).
Large-Scale Genome-Wide Association Studies on a GPU Cluster Using a CUDA-Accelerated PGAS Programming Model
International journal of High Performance Computing Applications, Accepted.

Kässens, JC, Wienbrandt, L, González-Domínguez, J, Schmidt, B, and Schimmler, M (2015).
High-Speed Exhaustive 3-locus Interaction Epistasis Analysis on FPGAs
The Journal of Computational Science, 9:131-136.

González-Domínguez, J and Schmidt, B (2015).
GPU-Accelerated Exhaustive Search for Third-Order Epistatic Interactions in Case-Control Studies
The Journal of Computational Science, 8:93-100.

González-Domínguez, J and Schmidt, B (2015).
Using a CUDA-Accelerated PGAS Model on a GPU Cluster for Bioinformatics
In: GPU Technology Conference (GTC 2015).

Liu, Y, González-Domínguez, J, and Schmidt, B (2015).
Faster Compressed Sparse Row (CSR)-based Sparse Matrix-Vector Multiplication using CUDA
In: GPU Technology Conference (GTC 2015).

González-Domínguez, J, Wienbrandt, L, Kässens, JC, Ellinghaus, D, Schimmler, M, and Schmidt, B (2015).
Parallelizing Epistasis Detection in GWAS on FPGA and GPU-accelerated Computing Systems
IEEE/ACM Transactions on Computational Biology and Bioinformatics, Accepted.

Teaching

  • "Parallel Algorithms and Architectures (PAA)" course, Tutorials (Summer Semester 2014) Johannes Gutenberg Universität, Germany
  • "Computer Architecture" course, 120 hours of lab lessons (12/01/2012 – 31/07/2013) B.S. in Computer Science, Faculty of Informatics, University of A Coruña, Spain
  • "Computer Technology" course, 90 hours of lab lessons (23/03/2009 – 31/07/2009) B.S. in Computer Science, Faculty of Informatics, University of A Coruña, Spain